Analysis API

This page is the entry point for the analysis-side API.

PolyzyMD analysis code is organized around a small shared core plus analysis-specific implementations for stable and experimental workflows.

Core Analysis Interfaces

• polyzymd.analysis

• polyzymd.analysis.config

• polyzymd.analysis.core.registry

• polyzymd.analysis.results.base

These modules define the reusable contracts for analysis settings, analyzers, and serialized result objects.

Stable Analysis Implementations

• polyzymd.analysis.rmsf

• polyzymd.analysis.distances

• polyzymd.analysis.contacts

• polyzymd.analysis.triad

• polyzymd.analysis.secondary_structure

Related Documentation

• Configuration API

• Compare API

• API Overview

• Analyze a Multi-Condition Study

Notes

• The analysis API is still evolving rapidly as the post-simulation analysis stack stabilizes.

• Stable release workflows are RMSF, contacts, distances, catalytic triad, and secondary structure.

• Experimental workflows remain documented separately in the user docs and are clearly labeled there.