# Tutorials

Tutorials are guided learning paths. They are the right place to start when you
want a worked example with a clear beginning, middle, and end.

## Featured Tutorials

- [Run Your First PolyzyMD Simulation](quickstart.md)
  Build your first project scaffold and validate a minimal run.
- [Run Your First Analysis](first_analysis.md)
  Go from finished trajectories to RMSF results in five steps.
- [Analyze a Multi-Condition Study](analysis_complete_workflow.md)
  Follow the full path from finished trajectories to comparison figures.
- [Measure Surface Accessibility with SASA](sasa_analysis.md)
  Configure multi-run SASA analysis to quantify polymer shielding effects.

## What Belongs Here

Tutorials should help you learn by doing:

- one main path
- explicit prerequisites
- visible success states
- limited branching and digressions

If you already know what you want to do, jump to
[How-To Guides](../how_to/index.md) instead.

<!-- IMAGE OPPORTUNITY: Add a compact pipeline figure for the end-to-end
analysis workflow, using the existing compare/analyze stages as a visual
backbone. -->

```{toctree}
:hidden:
:maxdepth: 1

Run Your First PolyzyMD Simulation <quickstart>
Run Your First Analysis <first_analysis>
Analyze a Multi-Condition Study <analysis_complete_workflow>
Measure Surface Accessibility with SASA <sasa_analysis>
```