API Reference
=============

Use these pages for module-level API documentation.

Start with one of the grouped API sections below.

- :doc:`Package and workflow APIs <package_api>` — configuration, builders,
  simulation, workflow, and core shared types.
- :doc:`Analysis APIs <analysis_api>` — plugin discovery, base classes, and
  shared analysis utilities.
- :doc:`MDAnalysis extension-layer APIs <mda_api>` — job execution, frame
  selection, artifacts, aggregation, comparison, and MDAnalysis primitives.