Tutorials

Tutorials are guided learning paths. They are the right place to start when you want a worked example with a clear beginning, middle, and end.

Featured Tutorials

• Run Your First Analysis Go from finished trajectories to RMSF results in five steps.

• Prepare a PDB for OpenFF and PolyzyMD Inspect and clean a raw 4CHA crystal structure before simulation setup.

• Analyze a Multi-Condition Study Follow the full path from finished trajectories to comparison figures.

• Measure Surface Accessibility with SASA Configure multi-run SASA analysis to quantify polymer shielding effects.

What Belongs Here

Tutorials should help you learn by doing:

• one main path

• explicit prerequisites

• visible success states

• limited branching and digressions

If you already know what you want to do, jump to How-To Guides instead.