All modules for which code is available

• polyzymd.builders.enzyme
• polyzymd.builders.polymer
• polyzymd.builders.solvent
• polyzymd.builders.substrate
• polyzymd.builders.system_builder
• polyzymd.compare.binding_free_energy_formatters
• polyzymd.compare.comparators.binding_free_energy
• polyzymd.compare.comparators.contacts
• polyzymd.compare.comparators.distances
• polyzymd.compare.comparators.exposure
• polyzymd.compare.comparators.polymer_affinity
• polyzymd.compare.comparators.rmsf
• polyzymd.compare.comparators.triad
• polyzymd.compare.config
• polyzymd.compare.core.base
• polyzymd.compare.core.registry
• polyzymd.compare.plotters.binding_free_energy
• polyzymd.compare.plotters.exposure
• polyzymd.compare.plotters.polymer_affinity
• polyzymd.compare.polymer_affinity_formatters
• polyzymd.compare.results.binding_free_energy
• polyzymd.compare.results.exposure
• polyzymd.compare.results.polymer_affinity
• polyzymd.compare.settings
• polyzymd.compare.statistics
• polyzymd.config.loader
• polyzymd.config.schema
• polyzymd.core.parameters
• polyzymd.core.restraints
• polyzymd.simulation.continuation
• polyzymd.simulation.runner
• polyzymd.workflow.daisy_chain
• polyzymd.workflow.slurm